TY - JOUR
T1 - Age-related next-generation sequencing mutational analysis in 1196 melanomas
AU - Santamaria-Barria, Juan A.
AU - Matsuba, Chikako
AU - Khader, Adam
AU - Scholar, Anthony J.
AU - Garland-Kledzik, Mary
AU - Fischer, Trevan D.
AU - Essner, Richard
AU - Salomon, Matthew P.
AU - Mammen, Joshua M.V.
AU - Goldfarb, Melanie
N1 - Publisher Copyright:
© 2023 The Authors. Journal of Surgical Oncology published by Wiley Periodicals LLC.
PY - 2023/6
Y1 - 2023/6
N2 - Background and Objectives: Melanoma mutational burden is high and approximately 50% have oncogenic mutations in BRAF. We sought to evaluate age-related mutational differences in melanoma. Methods: We analyzed melanoma samples in the Genomics Evidence Neoplasia Information Exchange database. Targetable mutations were identified using the Precision Oncology Knowledge Base (OncoKB). Results: We found 1194 patients with a common set of 30 genes. The top mutated genes in patients <40 years old (y/o) (n = 98) were BRAF (59%), TP53 (31%), NRAS (17%), and PTEN (14%); in 40–59 y/o (n = 354) were BRAF (51%), NRAS (30%), TP53 (26%), and APC (13%); and in ≥60 y/o (n = 742) were BRAF (38%), NRAS (33%), TP53 (26%), and KDR (19%). BRAF mutations were almost mutually exclusive from NRAS mutations in <40 y/o (58/59). Mutational burden increased with age, with means of 2.39, 2.92, and 3.67 mutations per sample in patients <40, 40–59, and ≥60 y/o, respectively (p < 0.0001). There were 10 targetable mutations meeting OncoKB criteria for melanoma: BRAF (level 1), RET (level 1), KIT (level 2), NRAS (level 3A), TP53 (level 3A), and FGFR2, MET, PTEN, PIK3CA, and KRAS (level 4). Conclusions: Mutations in melanoma have age-related differences and demonstrates potential targetable mutations for personalized therapies.
AB - Background and Objectives: Melanoma mutational burden is high and approximately 50% have oncogenic mutations in BRAF. We sought to evaluate age-related mutational differences in melanoma. Methods: We analyzed melanoma samples in the Genomics Evidence Neoplasia Information Exchange database. Targetable mutations were identified using the Precision Oncology Knowledge Base (OncoKB). Results: We found 1194 patients with a common set of 30 genes. The top mutated genes in patients <40 years old (y/o) (n = 98) were BRAF (59%), TP53 (31%), NRAS (17%), and PTEN (14%); in 40–59 y/o (n = 354) were BRAF (51%), NRAS (30%), TP53 (26%), and APC (13%); and in ≥60 y/o (n = 742) were BRAF (38%), NRAS (33%), TP53 (26%), and KDR (19%). BRAF mutations were almost mutually exclusive from NRAS mutations in <40 y/o (58/59). Mutational burden increased with age, with means of 2.39, 2.92, and 3.67 mutations per sample in patients <40, 40–59, and ≥60 y/o, respectively (p < 0.0001). There were 10 targetable mutations meeting OncoKB criteria for melanoma: BRAF (level 1), RET (level 1), KIT (level 2), NRAS (level 3A), TP53 (level 3A), and FGFR2, MET, PTEN, PIK3CA, and KRAS (level 4). Conclusions: Mutations in melanoma have age-related differences and demonstrates potential targetable mutations for personalized therapies.
KW - NGS
KW - melanoma
KW - mutations
KW - next-generation sequencing
UR - http://www.scopus.com/inward/record.url?scp=85150770456&partnerID=8YFLogxK
U2 - 10.1002/jso.27239
DO - 10.1002/jso.27239
M3 - Article
C2 - 36938777
AN - SCOPUS:85150770456
SN - 0022-4790
VL - 127
SP - 1187
EP - 1195
JO - Journal of Surgical Oncology
JF - Journal of Surgical Oncology
IS - 7
ER -